clogs - PMC

Laurence Garczarek, Ulysse Guyet, Hugo Doré, Gregory K Farrant, Mark Hoebeke, Loraine Brillet-Guéguen, Antoine Bisch, Mathilde Ferrieux, Jukka Siltanen, Erwan Corre, Gildas Le Corguillé, Morgane Ratin, Frances D Pitt, Martin Ostrowski, Maël Conan, Anne Siegel, Karine Labadie, Jean-Marc Aury, Patrick Wincker, David J Scanlan, Frédéric Partensky

Nucleic Acids Res. 2021 Jan 8; 49(D1): D667–D676. Published online 2020 Oct 30. doi: 10.1093/nar/gkaa958

PMCID:: PMC7779031

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Catalytic antimicrobial robots for biofilm eradication

Geelsu Hwang, Amauri J. Paula, Elizabeth E. Hunter, Yuan Liu, Alaa Babeer, Bekir Karabucak, Kathleen Stebe, Vijay Kumar, Edward Steager, Hyun Koo

Sci Robot. Author manuscript; available in PMC 2019 Oct 24.

Published in final edited form as: Sci Robot. 2019 Apr 24; 4(29): eaaw2388. doi: 10.1126/scirobotics.aaw2388

PMCID:: PMC6748647

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Discovery of (5-Phenylfuran-2-yl)methanamine Derivatives as New Human Sirtuin 2 Inhibitors

Lijiao Wang, Chao Li, Wei Chen, Chen Song, Xing Zhang, Fan Yang, Chen Wang, Yuanyuan Zhang, Shan Qian, Zhouyu Wang, Lingling Yang

Molecules. 2019 Aug; 24(15): 2724. Published online 2019 Jul 26. doi: 10.3390/molecules24152724

PMCID:: PMC6695594

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The Effects of Common Footwear on Joint Loading in Osteoarthritis of the Knee

Najia Shakoor, Mondira Sengupta, Kharma C. Foucher, Markus A. Wimmer, Louis F. Fogg, Joel A. Block

Arthritis Care Res (Hoboken) Author manuscript; available in PMC 2011 Jul 1.

Published in final edited form as: Arthritis Care Res (Hoboken). 2010 Jul; 62(7): 917–923. doi: 10.1002/acr.20165

PMCID:: PMC2940270

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Who cleans the clogs?

James Owen Drife

BMJ. 2003 Nov 8; 327(7423): 1115.

PMCID:: PMC261788

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Mechanisms of gill-clogging by hagfish slime

Luke Taylor, Gaurav Chaudhary, Gaurav Jain, Andrew Lowe, Andre Hupe, Atsuko Negishi, Yu Zeng, Randy H. Ewoldt, Douglas S. Fudge

J R Soc Interface. 2023 Mar; 20(200): 20220774. Published online March 29, 2023. doi: 10.1098/rsif.2022.0774

PMCID:: PMC10050918

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Mitochondrial protein import clogging as a mechanism of disease

Liam P Coyne, Xiaowen Wang, Jiyao Song, Ebbing de Jong, Karin Schneider, Paul T Massa, Frank A Middleton, Thomas Becker, Xin Jie Chen

eLife. 2023; 12: e84330. Published online 2023 May 2. doi: 10.7554/eLife.84330

PMCID:: PMC10208645

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Synthesis, Molecular Properties Estimations, and Dual Dopamine D₂ and D₃ Receptor Activities of Benzothiazole-Based Ligands

Moritz Schübler, Bassem Sadek, Tim Kottke, Lilia Weizel, Holger Stark

Front Chem. 2017; 5: 64. Published online 2017 Sep 12. doi: 10.3389/fchem.2017.00064

PMCID:: PMC5601007

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How cholesterol clogs the arteries

Nicole LeBrasseur

J Cell Biol. 2003 Sep 1; 162(5): 750. doi: 10.1083/jcb1625rr1

PMCID:: PMC2248407

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Developing guidance for feeding tube administration of oral medications

Mark G. Klang

JPEN J Parenter Enteral Nutr. Author manuscript; available in PMC 2023 Sep 19.

Published in final edited form as: JPEN J Parenter Enteral Nutr. 2023 May; 47(4): 519–540. Published online 2023 Mar 22. doi: 10.1002/jpen.2490

PMCID:: PMC10508335

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Bacteria Delay the Jamming of Particles at Microchannel Bottlenecks

Zenamarkos Bantie Sendekie, Arthur Gaveau, Rob G. H. Lammertink, Patrice Bacchin

Sci Rep. 2016; 6: 31471. Published online 2016 Aug 11. doi: 10.1038/srep31471

PMCID:: PMC4980593

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From cooperative to uncorrelated clogging in cross-flow microfluidic membranes

R. van Zwieten, T. van de Laar, J. Sprakel, K. Schroën

Sci Rep. 2018; 8: 5687. Published online 2018 Apr 9. doi: 10.1038/s41598-018-24088-6

PMCID:: PMC5890277

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A microfluidic platform integrating pressure-driven and electroosmotic-driven flow with inline filters for affinity separations

Weijia Leng, Kimberly Evans, Michael G. Roper

Anal Methods. Author manuscript; available in PMC 2020 Dec 7.

Published in final edited form as: Anal Methods. 2019 Dec 7; 11(45): 5768–5775. Published online 2019 Oct 29. doi: 10.1039/C9AY01758E

PMCID:: PMC6980329

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Professionalism practiced by dental students – Patient's perspective: A questionnaire-based survey

Sanjog Agarwal, Subhabrata Maiti, Vatika Agarwal

J Adv Pharm Technol Res. 2022 Nov; 13(Suppl 1): S249–S253. Published online 2022 Nov 30. doi: 10.4103/japtr.japtr_327_22

PMCID:: PMC9836157

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Bacterial contamination in a modern operating suite, 2. Effect of a zoning system on contamination of floors and other surfaces.

A. Hambraeus, S. Bengtsson, G. Laurell

J Hyg (Lond) 1978 Feb; 80(1): 57–67. doi: 10.1017/s0022172400053390

PMCID:: PMC2129985

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PMC Images search for clogs

Fig 2Network analysis of co-occurring CLOGs.

(A) Orthologous genes are identified using an all-against-all BLASTp comparison and are grouped into cluster of likely orthologous genes (CLOGs). CLOGs are classified into three sets: core CLOGs (present in all strains), shared CLOGs (present in several but not all strains) and unique CLOGs (present in a single strain). (B) The phylogenetic profile of each CLOG indicates the set of strains whose genome is annotated with genes corresponding to the CLOG. Pair-wise co-occurrence of CLOGs is identified using the similarity of phylogenetic profiles. CLOGs are grouped into modules of co-occurring CLOGs using a community-detection algorithm. (C) A network view on co-occurring CLOGs. We identify a total of 563 modules with 1930 CLOGs. Circular genome maps were constructed using the CiVi tool [].

Modules of co-occurrence in the cyanobacterial pan-genome reveal functional associations between groups of ortholog genes

PLoS Genet. 2018 Mar;14(3):e1007239.
Figure 2

Distribution of CLOGs across 16 cyanobacterial genomes. A - A histogram of the number of assigned strains to each CLOG. We distinguish between core CLOGs (660 CLOGs, assigned to all 16 strains), shared CLOGs (6668 CLOGs, assigned to 2-15 strains), and unique CLOGs (13910 CLOGs, assigned to a unique strain). B - Number of CLOGs assigned to each strain, highlighting the contribution of core, shared, and unique CLOGs.

The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms

BMC Genomics. 2012;13:56-56.
Figure 5

Distribution of metabolic CLOGs across cyanobacterial genomes. A - A histogram of the number of assigned genes to CLOGs, highlighting contributions from CLOGs with and without assigned EC number. CLOGs with assigned EC number are highly prevalent among the core CLOGs. We note that the scale is logarithmic. B - Number of CLOGs with dedicated EC number assigned for each strain, distinguishing between contributions from core, shared, and unique CLOGs.

The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms

BMC Genomics. 2012;13:56-56.
Figure 6

Comparison of CLOGs with and without assigned EC numbers. A - A bar plot of the number of CLOGs with and without assigned EC number in all 16 strains. B - Number of CLOGs with assigned EC number compared to CLOGs without assigned EC number in the strains of different size. The red line indicates a least square regression line to highlight the tendency of the data. The data shows a weak correlation of size (total number of CLOGs) and number of CLOGs with assigned EC numbers.

The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms

BMC Genomics. 2012;13:56-56.